Microbiology repetitorium

Microbiology repetitorium

Aerobic:	Pseudomonads , Mycobacteria, Neisseria , Corynebacteria , Bacillus anthracis , Nokardie , Bordetella , Brucella , Francisella, Legionella , Leptospira
Strictly anaerobic:	Clostridium botulinum , Cl. tetani , Cl. difficult
Aerotolerant anaerobes:	Bacteroides spp. , Cl. perfringens , Cl. histolyticum
Optional anaerobic:	most bacteria, incl. E.coli , Staphylococci , Streptococci , Vibria
Microaerophilic:	Lactobacilli, Treponema pal. , Actinomycetes , Campylobacter , Helicobacter pylori , Borrelia
Capnophilic:	Meningococci , Gonococci , Haemophilus
Catalase positive:	Staphylococci (not Streptococci!), Meningococci , Gonococci , Enterobacteria , Pseudomonads , Bruces , Campylobacter , Corynebacteria , Listeria
Obligatory intracellular parasites:	Chlamydia , Rickettsia, Coxiella burnetii , Mycobacteria
Hemolyzing:	Cl. botulinum , Cl. tetani et al., E. coli (EHEC strains), Aeromonas, Pseudomonas , Bordetella pertussis et parapertussis, STAU , Streptococcus pyogenes , Strep. agalactiae , Streptococcus pneumoniae , oral (viridizing) streptococci (alpha-hemolysis), Bacillus cereus
Gram-positive:	Cl. botulinum , Cl. tetani , Cl. perfringens , Cl. difficile , Actinomycetes , Staphylococcus aureus , Staphylococcus epidermidis , Streptococcus pyogenes and otherstreptococci, Enterococci, Bacillus anthracis et cereus, Corynebacterium diphtheriae and other corynebacteria, Listeria monocytogenes , Nokardie
Gram-negative:	Bacteroides spp. , Fusobacterium , E.coli , Klebsiella , Enterobacter, Proteus, Citrobacter, Yersinia pestis , Yersinia enterocolitica Yersinia pseudotuberculosis , Salmonella typhi , Shigelly , Vibrio cholerae , Aeromonas , Haemophilus influenzae , Pasterurella mella , Brucella , Bartonella , Francisella, Campylobacter jejuni ,Helicobacter pylori , Legionella pneumophila , Neisseria gonorrhoeae , Neisseria meningitidis , Treponema pallidum , Borrelia burgdorferi et recurrentis, Rickettsia, ( Chlamydia trachomatis ), Coxiella burnetii ,
Movable:	Clostridia (x Cl. Perfingens ), Enterobacteria (x Klebsiella, Shigella, Yersinia pestis ), Salmonella , Vibrio , Aeromonas, Pseudomonas , Campylobacter , Treponema pallidum , Leptospira interrogans, Borrelia burgdorferi , Listeria monocytogenes , Bacillus

Bacteria
G +	coke aerobic Micrococcus Micrococcus luteus Rhodococcus Rhodococcus equi facultatively anaerobic Enterococcus Enterococcus durans • Enterococcus faecalis • Enterococcus faecium Streptococcus Streptococcus agalactiae • Streptococcus mutans • Streptococcus pneumoniae • Streptococcus pyogenes • Streptococcus suis • Oral streptococci Staphylococcus Staphylococcus aureus • Staphylococcus epidermidis • Staphylococcus intermedius • Staphylococcus saprophyticus anaerobic Peptococcus Peptococcus niger Peptostreptococcus Peptostreptococcus anaerobius • Peptostreptococcus prevotii • Peptostreptococcus vaginalis sticks aerobic + facultative anaerobic Arcanobacter Arcanobacterium haemolyticum Bacillus Bacillus anthracis • Bacillus cereus Corynebacterium Corynebacterium diphtheriae • Corynebacterium jeikeium • Corynebacterium ulcerans • Corynebacterium urealyticum Erysipelothrix Erysipelothrix rhusiopathiae Listeria Listeria monocytogenes Nocardia Nocardia asteroides • Nocardia brasiliensis Rhodococcus Rhodococcus equi anaerobic Actinomyces Actinomyces israeli • Actinomyces naeslundi Bifidobacterium Bifidobacterium dentium Clostridium Clostridium botulinum • Clostridium difficile • Clostridium novyi • Clostridium tetani • Clostridium perfringens • Clostridium septicum • Clostridium ulcerans Lactobacillus Lactobacillus acidophilus Propionibacterium Propionibacterium acnes • Propionibacterium propionicus
Go	coke aerobic Acinetobacter Acinetobacter calcoaceticus Moraxella Moraxella catarrhalis • Moraxella lacunata Neisseria Neisseria gonorrhoeae • Neisseria meningitidis • Non-pathogenic species of Neisseria anaerobic Veillonella Veillonella alcalescens • Veillonella parvula cocobacilli aerobic Rickettsia Rickettsia prowazekii • Rickettsia rickettsii • Rickettsia typhi sticks aerobic Alcaligentes Alkaligentes feacalis Bartonella Bartonella bacilliformis • Bartonella henselae • Bartonella quintana Bordetella Bordetella bronchiseptica • Bordetella parapertussis • Bordetella pertussis Brucella Brucella abortus • Brucella canis • Brucella melitensis • Brucella suis Burkholderia Burkholderia cepacia • Burkholderia mallei • Burkholderia pseudomallei Francisella Francisella tularensis Legionella Legionella pneumophila Kingella Kingella denitrificans • Kingella kingae • Kingella oralis Pseudomonas Pseudomonas aeruginosa • Pseudomonas fluorescens Stenotrophomonas Stenotrophomonas maltophilia facultatively anaerobic Actinobacillus Actinobacillus equli • Actinobacillus lignieresii Aeromonas Aermonas caviae • Aeromonas hydrophila • Aeromonas sobria Afipia Afipia felis Citrobacter Citrobacter freundi • Citrobacter koseri Eikenella Eikenella corrodens Enterobacter Enterobacter aerogenes • Enterobacter cloacae Escherichia Escherichia coli Haemophilus Haemophilus ducreyi • Haemophilus haemolyticus • Haemophilus influenzae • Haemophilus parainfluenzae Klebsiella Klebsiella granulomatis • Klebsiella oxytoca • Klebsiella pneumoniae Pasteurella Pasteurella haemolytica • Pasteurella multocida • Pasteurella ureae Plesiomonas Plesiomonas shigelloides Proteus Proteus mirabilis • Proteus vulgaris Salmonella Salmonella Enteritidis • Salmonella Typhi • Salmonella Paratyphi Serratia Serratia marcescens Shigella Shigella boydii • Shigella dysenteriae • Shigella flexneri • Shigella sonnei Vibrio Vibrio cholerae • Vibrio parahemolyticus Yersinia Yersinia enterocolitica • Yersinia pestis • Yersinia pseudotuberculosis microaerophilic Campylobacter Campylobacter coli • Campylobacter fetus • Campylobacter jejuni Helicobacter Helicobacter pylori anaerobic Bacteroides Bacteroides fragilis • Bacteroides vulgatus Fusobacterium Fusobacterium necrophorum • Fusobacterium nucleatum • Fusobacterium stabile Leptotricha Leptotricha buccalis Mobiluncus Mobiluncus curtisii • Mobiluncus mulieris Prevotella Prevotella melaninogenica Porphyromonas Porphyromonas gingivalis
acid resistant	sticks aerobic Mycobacterium Atypical mycobacteria • Mycobacterium tuberculosis • Mycobacterium leprae
non-stainable G +/-	spiral strictly aerobic Leptospira Leptospira biflexa • Leptospira interrogans • Leptospira parva microaerophilic Borrelia Borrelia burgdorferi • Borrelia hermsi • Borrelia recurrentis • Borrelia vincenti strictly anaerobic Treponema Non-pathogenic treponems • Treponema carateum • Treponema pallidum • Treponema phagedenis • Treponema pertenue
Portal: Microbiology

Viruses
RNA viruses	Unwrapped ds Reoviry genus Orthoreovirus , genus Orbivirus , genus Rotavirus , genus Coltivirus ss (+) Astroviruses genus Mamastrovirus Caliciviry genus Norovirus Picornaviry genus Enterovirus - coxsackie viruses , echoviruses , enteroviruses 68–71 , polioviruses , genus Rhinovirus , genus Hepatovirus - hepatitis A virus Hepeviry hepatitis E virus Wrapped ss (+) Coronaviruses genus Coronavirus , genus Torovirus Flaviviruses genus Flavivirus - dengue viruses • Japanese encephalitis virus • tick-borne encephalitis complex viruses • Zika virus • yellow fever virus , genus Hepacivirus - hepatitis C virus Retroviruses genus Alpharetrovirus , genus Betaretrovirus , genus Gammaretrovirus , genus Deltaretrovirus , genus Epsilonretrovirus , genus Lentivirus - HIV , genus Spumavirus Togaviry genus Alphavirus - EEE • VEE • WEE , genus Rubivirus - rubella virus ss (-) Arenaviruses Lassa fever virus , lymphocytic choriomeningitis virus Bunyaviry genus Bunyavirus , genus Hantavirus , genus Nairovirus , genus Phlebovirus Filovir genus Ebolavirus - Ebola viruses , genus Marburgvirus - Marburg disease virus Orthomyxoviruses genus Influenzavirus A , genus Influenzavirus B , genus Influenzavirus C , genus Thogotovirus Paramyxoviruses genus Morbillivirus - measles virus , genus Paramyxovirus - parainfluenza virus • mumps virus , genus Pneumovirus - human respiratory syncytial virus Rhabdoviruses genus Lyssavirus - rabies virus , genus Vesiculovirus - vesicular stomatitis virus genus Deltavirus - hepatitis D virus
DNA viruses	Unwrapped ds Adenoviruses genus Aviadenovirus , genus Mastadenovirus Papillomaviruses human papillomavirus Polyomaviruses BC virus , JK virus ss Parvoviruses parvovirus B19 Wrapped ds Herpesviruses herpes simplex virus • varicella zoster virus • Epstein-Barr virus • cytomegalovirus • human herpesvirus-6 (HHV-6) • human herpesvirus-7 (HHV-7) • human herpesvirus-8 (HHV-8) Hepadnaviry hepatitis B virus Poxviruses smallpox virus • vaccinia virus • molluscum contagiosum virus
Unconventional viruses	Prions
Portal: Microbiology

Parasites
Protozoa (Protozoa)	Amoeboid protozoa Exchange offices Acanthamoeba spp. • Balamuthia mandrillaris • Naegleria fowleri Whips Leishmania Leishmania braziliens • Leishmania donovani • Leishmania infantum • Leishmania major • Leishmania tropica intestinal parasites Dientamoeba fragilis • Entamoeba histolytica • Giardia intestinalis Trichomonads Trichomonas vaginalis Trypanosomes Trypanosoma cruzi • Trypanosoma gambiense • Trypanosoma rhodensiense Rinning Balantidium coli Sporozoa Babesie Babesia bovis • Babesia divergens • Babesia microti Coccidia Cryptosporidium parvum • Cyclospora cayetanensis • Isospora belli Microsporidia Enterocytozoon bieneusi • Encephalitozoon spp. interhost Toxoplasma gondii Plasmodia Plasmodium falciparum • Plasmodium malariae • Plasmodium ovale • Plasmodium vivax
Helmint	Trematoda (Motolice) liver and lung mites Clonorchis sinensis • Fasciola hepatica • Opistorchis spp. • Paragonimus spp. Schistosomes Schistosoma haematobium • Schistosoma japonicum • Schistosoma intercalatum • Schistosoma mansoni • Schistosoma mekongi intestinal tapeworm Fasciolopsis buski • Heterophyes heterophyes • Metagonimus yokogawai Nematode (Nematode) Filaria Brugia malayi • Dirofilaria immitis • Dirofilaria repens • Loa loa • Mansonella perstans • Onchocerca volvulus • Wuchereria bancrofti intestinal nematodes Ancylostoma duodenale • Ascaris lumbricoides • Enterobius vermicularis • Necator americanus • Strongyloides stercoralis • Trichuris trichuria tissue nematodes Dracunculus medinensis • Toxocara spp. • Trichinella spiralis Cestoda (Tasemnice) intestinal cestodes Diphyllobothrium latum • Dypilidum caninum • Hymenolepis nana • Taenia saginata • Taenia solium tissue cestodes Echinococcus granulosus • Echinococcus multilocularis • Taenia solium
Arthropods	Insect Anoplura (lice) • Diptera (diptera) • Cimex lectularius • Siphonaptera (fleas) Spiders Ixodes ricinus • Sarcoptes scabiei
Intracellular parasites	Chlamydia Chlamydia pneumoniae • Chlamydia psittaci • Chlamydia trachomatis
Portal: Microbiology

Links

References

• BEDNÁŘ, M, V FRAŇKOVÁ and J SCHINDLER, et al. Medical microbiology - bacteriology, virology, parasitology. 1st edition. Prague: Marvil, 1996. 558 pp.  ISBN 80-238-0297-6 .